Journal Articles
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Gyehyun Kim, Jeongjin Lee, Jinwook Seo, Wooshik Lee, Yeong-Gil Shin, Bohyoung Kim, ""Automatic Teeth Axes Calculation for Well-Aligned Teeth Using Cost Profile Analysis Along Teeth Center Arch," IEEE Transactions on Biomedical Engineering, Vol.59, No.4, pp.1145-1154, April 2012.
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Hyunna Lee, Bohyoung Kim, Kil Joong Kim, Jinwook Seo, Seongjin Park, Yeong-Gil Shin, and Kyoung Ho Lee, "Introduction of heat map to fidelity assessment of compressed CT images," Medical Physics, Vol. 38, No. 2, pp. 4667-4671, Aug 2011.
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Bohyoung Kim, Hyunna Lee, Kil Joong Kim, Jinwook Seo, Seongjin Park, Yeong-Gil Shin, Soo Hong Kim, and Kyoung Ho Lee,"Comparison of three image comparison methods for the visual assessmentof the image fidelity of compressed computed tomography images," Medical Physics, Vol. 38, No. 2, pp. 836-844, Feb 2011.
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Devaney JM, Gordish-Dressman H, Harmon BT, Bradbury MK, Devaney SA, Harris TB, Thompson PD, Clarkson PM, Price TB, Angelopoulos TJ, Gordon PM, Moyna NM, Pescatello LS, Visich PS, Zoeller RF, Seip RL, Seo J, Kim BH, Tosi LL, Garcia M, Li R, Zmuda JM, Delmonico MJ, Lindsay RS, Howard BV, Kraus WE, Hoffman EP, "AKT1 polymorphisms are associated with risk for metabolic syndrome," Human Genetics, Vol. 129, No. 2, pp. 129-139, Feb 2011.
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Gyehyun Kim, Jeongjin Lee, Ho Lee, Jinwook Seo, Yun-Mo Koo, Yeong-Gil Shin, and Bohyoung Kim, "Automatic Extraction of Inferior Alveolar Nerve Canal Using Feature-Enhancing Panoramic Volume Rendering," IEEE Transactions on Biomedical Engineering, Vol.58, No.2, pp.253-264, Feb 2011.
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Kyle Koh, Bongshin Lee, Bohyoung Kim, and Jinwook Seo, "ManiWordle: Providing Flexible Control over Wordle," IEEE Transactions on Visualization and Computer Graphics, Vol. 16, No. 6, pp. 1190-1197, Nov/Dec 2010.
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Byeonghun Lee, Jihye Yun, Jinwook Seo, Byonghyo Shim, Yeong-Gil Shin, Bohyoung Kim, "Fast High-Quality Volume Ray Casting with Virtual Samplings," IEEE Transactions on Visualization and Computer Graphics, Vol. 16, No. 6, pp. 1525-1532, Nov/Dec 2010.
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Hyunna Lee, Kyoung Ho Lee, Kil Joong Kim, Seongjin Park, Jinwook Seo, Yeong-Gil Shin, and Bohyoung Kim, "Advantage in Image Fidelity and Additional Computing Time of JPEG2000 3D in Comparison to JPEG2000 in Compressing Abdomen CT Image Datasets of Different Section Thicknesses," Medical Physics, Vol. 37, No. 8, pp. 4238-4248, Aug 2010.
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Kil Joong Kim, Bohyoung Kim, Rafal Mantiuk, Thomas Richter, Hyunna Lee, Heung-Sik Kang, Jinwook Seo, and Kyoung Ho Lee, "A Comparison of Three Image Fidelity Metrics of Different Computational Principles for JPEG2000 Compressed Abdomen CT Images," IEEE Transactions on Medical Imaging, Vol. 29, No. 8, pp. 1499-1503, Aug 2010.
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Bohyoung Kim, Bongshin Lee, Susan Knoblach, Eric Hoffman, and Jinwook Seo, "GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories," IEEE Transactions on Visualization and Computer Graphics, Vol. 15, No. 6, pp. 905-912, Nov/Dec 2009.
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Kil Joong Kim, Bohyoung Kim, Kyoung Ho Lee, Rafal Mantiuk, Heung-Sik Kang, Jinwook Seo, So Yeon Kim, and Young Hoon Kim, "Objective Index of Image Fidelity for JPEG2000 Compressed Body CT Images," Medical Physics, Vol. 36, Issue 7, pp. 3218-3226, July 2009.
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Bohyoung Kim, Kyoung Ho Lee, Kil Joong Kim, Thomas Richter, Heung-Sik Kang, So Yeon Kim, Young Hoon Kim, and Jinwook Seo, "JPEG2000 3D Compression vs. 2D Compression: An Assessment of Artifact Amount and Computing Time in Compressing Thin-section Abdomen CT Images," Medical Physics, Vol. 36, Issue 3, pp. 835-844, March 2009.
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Bongshin Lee, Kristy Brown, Yetrib Hathout, and Jinwook Seo, "GOTreePlus: An Interactive Gene Ontology Browser," Bioinformatics, Vol. 24, No. 7, pp. 1026-1028, 2008.
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Jinwook Seo and Heather Gordish-Dressman, "Exploratory Data Analysis with Categorical Variables: An Improved Rank-by-Feature Framework and a Case Study," International Journal of Human-Computer Interaction, Vol 23, No. 3, pp. 287-314, 2007.
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Bohyoung Kim, Bongshin Lee and Jinwook Seo, "Visualizing Set Concordance with Permutation Matrices and Fan Diagrams," Interacting with Computers, Vol. 19, Issue 5-6, pp. 630-643, 2007.
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Jinwook Seo and Eric P. Hoffman, "Probe set algorithms: Is there a rational best bet?" BMC Bioinformatics 7:395, 2006. (One of the highly accessed articles in the journal)
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Jinwook Seo and Ben Shneiderman, "Knowledge Discovery in High Dimensional Data: Case Studies and a User Survey for the Rank-by-Feature Framework," IEEE Transactions on Visualization and Computer Graphics, Vol. 12, No. 3, pp. 311-322, 2006.
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Jinwook Seo, Heather Gordish-Dressman and Eric P. Hoffman, " An Interactive Power Analysis Tool for Microarray Hypothesis Testing and Generation," Bioinformatics, Vol. 22, No. 7, pp. 808-814, 2006.
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Marina Bakay, Zuyi Wang, Gisela Melcon, Louis Schiltz, Jianhua Xuan, Po Zhao, Vittorio Sartorelli, Jinwook Seo, Elena Pegoraro, Corrado Angelini, Ben Shneiderman, Diana Escolar, Yi-Wen Chen, Sara T. Winokur, Chenguang Fan, Raul Mandler, Yoram Nevo, Erynn Gordon, Yitan Zhu, Yibin Dong, Yue Wang and Eric P. Hoffman,
"Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration," Brain, Vol. 129 No. 4, pp 996-1013, 2006.
- Jinwook Seo and Ben Shneiderman, "A Rank-by-Feature Framework for Interactive Exploration of Multidimensional Data," Information Visualization, Vol. 4, No. 2, pp. 99-113, 2005.
- Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman and Eric P Hoffman, " Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays," Bioinformatics, Vol. 20, pp. 2534-2544, 2004. [PubMed]
- Po Zhao, Jinwook Seo, Zuyi Wang, Yue Wang, Ben Shneiderman and Eric P Hoffman, "In vivo filtering of in vitro MyoD target data: An approach for identification of biologically relevant novel downstream targets of transcription factors," Comptes Rendus Biologies, Vol. 326, Issues 10-11, pp. 1049-1065, October-November 2003.
- Jinwook Seo and Ben Shneiderman, "Interactively Exploring Hierarchical Clustering Results," Computer, Vol. 35, No. 7, pp. 80-86, July 2002.
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Bo Hyoung Kim, Jinwook Seo and Yeong Gil Shin, "Binary Volume Rendering using the Slice-based Binary Shell," The Visual Computer, Vol. 17, No. 4, pp.243-257, 2001.
- Bo Hyoung Kim, Jinwook Seo and Yeong Gil Shin, "A Rendering Algorithm for Binary Volume Data based on Slice-based Binary Shell", Journal of KISS (Korea Information Science Society), Vol. 27, No. 5, 2000.
Conference Papers and Posters
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Hyungmin Lee, Sooyun Lee, Namwook Kim, and Jinwook Seo, "JigsawMap: connecting the past to the future by mapping historical textual cadasters," In Proceedings of the 2012 ACM annual conference on Human Factors in Computing Systems (Austin, Texas, USA, May 5-10). CHI '12. ACM, New York, NY, 463-472.
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Kyle Koh, Bongshin Lee, Bohyoung Kim, and Jinwook Seo, "ManiWordle: Providing Flexible Control over Wordle," IEEE InfoVis, Salt Lake City, Utah, USA, October 24 - 29, 2010.
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Byeonghun Lee, Jihye Yun, Jinwook Seo, Byonghyo Shim, Yeong-Gil Shin, Bohyoung Kim, "Fast High-Quality Volume Ray Casting with Virtual Samplings," IEEE Vis, Salt Lake City, Utah, USA, October 24 - 29, 2010.
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Hyunjoo Song, Bohyoung Kim, Bongshin Lee, and Jinwook Seo, "
A Comparative Evaluation on Tree Visualization Methods for Hierarchical Structures with Large Fan-outs," In Proceedings of the 28th international Conference on Human Factors in Computing Systems (Atlanta, Georgia, USA, April 10 - 15, 2010). CHI '10. ACM, New York, NY, 223-232. DOI= http://doi.acm.org/10.1145/1753326.1753359.
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Myoungsu Cho, Bohyoung Kim, Dong Kyun Jeong, Yeong-Gil Shin, and Jinwook Seo, "
Dynamic Query Interface for Spatial Proximity Query with Degree-of-Interest Varied by Distance to Query Point," In Proceedings of the 28th international Conference on Human Factors in Computing Systems (Atlanta, Georgia, USA, April 10 - 15, 2010). CHI '10. ACM, New York, NY, 693-702.
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Inbeom Hwang, Minsuk Kahng, Sung Eun Park, Jinwook Seo, Sang-goo Leei, "Si-Fi: interactive similar item finder," SIGIR 2010
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Bohyoung Kim, Bongshin Lee, Susan Knoblach, Eric Hoffman, and Jinwook Seo, "GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories," IEEE InfoVis, Atlantic City, NJ, USA, October 11-16, 2009.
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Jinwook Seo, "Discovering with Hierarchical Clustering Explorer", Discovery Exhibition, IEEE Information Visualization Conference, 2009. (Long Term Impact Award Winner)
- S.M. Knoblach, E.P. Hoffman and J. Seo, "SpinalCordLink: A New Web-based Visual Interface for
Analysis of a Large Spinal Cord Injury Expression Profiling Dataset," in Abstracts from The 26th
Annual National Neurotrauma Society Symposium, Orlando, FL (July 27-30, 2008), Journal of Neurotrauma, 25(7): 853-935, 2008.
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Bohyoung Kim, Bongshin Lee, and Jinwook Seo, "Visualizing Set Concordance with Permutation Matrix and Fan Diagram," IEEE Symposium on Information Visualization 2006 (Interactive Poster).
- Jinwook Seo and Ben Shneiderman, "A Rank-by-Feature Framework for Unsupervised Multidimensional Data Exploration Using Low Dimensional Projections," IEEE Symposium on Information Visualization 2004, pp. 65-72. Extended version was invited to the journal, Information Visualization.
- Jinwook Seo, Marina Bakay, Po Zhao, Yi-Wen Chen, Priscilla Clarkson, Ben Shneiderman, Eric P Hoffman, "Interactive Color Mosaic and Dendrogram Displays for Signal/Noise Optimization in Microarray Data Analysis, IEEE International Conference on Multimedia and Expo 2003, pp III-461~III-464.
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Jinwook Seo, "Interactive Exploration of Hierarchical Clustering Results: Scale up to Affymetrix Data, " NCRR Bioinformatics Conference, Boston, MA, September 2002 (Poster).
Book Chapters
Technical Reports and Others
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Bohyoung Kim, Bongshin Lee, and Jinwook Seo, "Visualizing Concordance of Sets," Tech. Report, HCIL-2006-07, April 2006.
- Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P Hoffman, "Building a Coherent Data Pipeline in Microarray Data Analyses: Optimization of Signal/Noise Ratios Using an Interactive Visualization Tool and a Novel Noise Filtering Method," Technical Report, HCIL-2003-44, 2003.
- Jinwook Seo and Ben Shneiderman, "Using Categorical Information in Multidimensional Data Sets: Interactive Partition and Cluster Comparison," Tech. Report, HCIL-2005-12, CS-TR-4752, UMIACS-TR-2005-55, ISR-TR-2005-102, May 2005.
- Jinwook Seo and Ben Shneiderman, "Understanding Clusters in Multidimensional Spaces: Making Meaning by Combining Insights from Coordinated Views of Domain Knowledge," Technical Report, HCIL-2004-03, 2004.
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Jinwook Seo and Ben Shneiderman, "Interactive Exploration of Multidimensional Microarray Data: Scatterplot Ordering, Gene Ontology Browser, and Profile Search," Tech. Report, HCIL-2003-25, CS-TR-4486, UMIACS-TR-2003-55, ISR-TR-2005-68, April 2003.